PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_000312
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 125aa    MW: 12623.4 Da    PI: 8.8557
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_000312genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.35.2e-3834122188
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                  +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq++
  DCAR_000312  34 PCGACKFLRRKCVAGCIFAPYFDSEQgSAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVH 122
                  7***********************9989***********************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7833124IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3734122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MSTVNPSSSA TSGAGSGSGG SSSGGGGGSS GGGPCGACKF LRRKCVAGCI FAPYFDSEQG  60
SAHFAAVHKV FGASNVSKLL LHIPVHKRLD AVVTICYEAQ ARLRDPVYGC VAHIFALQQQ  120
VHII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400358.11e-59PREDICTED: LOB domain-containing protein 18-like
RefseqXP_009795320.11e-59PREDICTED: LOB domain-containing protein 30
RefseqXP_016488575.11e-59PREDICTED: LOB domain-containing protein 30-like
RefseqXP_016514578.11e-59PREDICTED: LOB domain-containing protein 30-like
SwissprotO221313e-55LBD18_ARATH; LOB domain-containing protein 18
TrEMBLM0SXL21e-59M0SXL2_MUSAM; Uncharacterized protein
TrEMBLM1AYU89e-61M1AYU8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000332533e-60(Solanum tuberosum)
STRINGGSMUA_Achr5P11330_0013e-59(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.16e-55LOB domain-containing protein 18